SanDisk Membrain Software Instrukcja Użytkownika Pobierz pdf (Strona 5)

CONTENTS 5

Required programs

The following programs are required for this tutorial:

• VMD: Available at http://www.ks.uiuc.edu/Research/vmd/ (for all plat-

forms)

• NAMD: Available at http://www.ks.uiuc.edu/Research/namd/ (for all

platforms)

• Solvate (recommended): Available at

http://www.mpibpc.mpg.de/home/grubmueller/downloads/solvate/index.html

(be sure to add the following line to solvate.c before compilation: #include

<stdlib.h>)

Getting Started

You can ﬁnd the ﬁles for this tutorial in the mem-tutorial-files directory.

Below you c an see in Fig. 1 the ﬁles and directories of mem-tutorial-files.

Figure 1: Directory structure of mem-tutorial-ﬁles.

∗

This example-output di-

rectory is present only in the extended version of the tutorial.

To start VMD type vmd in a Unix terminal window, double-click on the VMD

application icon likely located in the Applications folder in Mac OS X, or click

on the Start → Programs → VMD menu item in Windows.

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SanDisk Membrain Software Instrukcja Użytkownika Strona 5